SNPbox: a modular software package for large-scale primer design

نویسندگان
چکیده

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

SNPbox: a modular software package for large-scale primer design

UNLABELLED We developed a modular software package SNPbox that automates and standardizes the generation of PCR primers and is used in the strategy for constructing single nucleotide polymorphisms (SNPs) maps. In this strategy, the focus of primer design can be either on the validation of annotated public SNPs or on the SNP discovery in exon regions or extended genomic regions, both by resequen...

متن کامل

A partition-based algorithm for clustering large-scale software systems

Clustering techniques are used to extract the structure of software for understanding, maintaining, and refactoring. In the literature, most of the proposed approaches for software clustering are divided into hierarchical algorithms and search-based techniques. In the former, clustering is a process of merging (splitting) similar (non-similar) clusters. These techniques suffered from the drawba...

متن کامل

Primer design for large scale sequencing.

We have developed PRIDE, a primer design program that automatically designs primers in single contigs or whole sequencing projects to extend the already known sequence and to double strand single-stranded regions. The program is fully integrated into the Staden package (GAP4) and accessible with a graphical user interface. PRIDE uses a fuzzy logic-based system to calculate primer qualities. The...

متن کامل

A Vision of Large-scale Software Design

I have been active in research for nearly 40 years. It is not possible to tell you all my experiences in the next 10 minutes, but I will try! More seriously, let me try to tell you how I stumbled on my latest research problem, what I can see clearly, and where my vision is blurred. Nearly 15 years ago, I was the chair of my department. We pretend that it is an important position where all kinds...

متن کامل

A Variable Structure Observer Based Control Design for a Class of Large scale MIMO Nonlinear Systems

This paper fully discusses how to design an observer based decentralized fuzzy adaptive controller for a class of large scale multivariable non-canonical nonlinear systems with unknown functions of subsystems’ states. On-line tuning mechanisms to adjust both the parameters of the direct adaptive controller and observer that guarantee the ultimately boundedness of both the tracking error and tha...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Bioinformatics

سال: 2004

ISSN: 1367-4803,1460-2059

DOI: 10.1093/bioinformatics/bti006